BIOL 2420

Microbiology

Disease agents, signs and symptoms, the people who worked it out, how atoms bond, how molecules cross membranes, the eukaryotic microbes, how microbes capture energy and make ATP, how they grow, DNA and DNA replication, transcription and translation, recombination, antibiotic resistance, and innate and adaptive immunity.

Games for this course

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Guided Learning with Simulations

Predict, explore, check · progress saves in this browser

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Chemical Bonding Simulation

Build atoms shell by shell, then share, transfer and tug on electrons with Bohr models. Seven guided stations run from energy shells to covalent, ionic and hydrogen bonds, and the Van der Waals grip that holds a gecko to glass.

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Seven guided stations · Completion card · Mouse, touch and keyboard

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Membrane Discovery Simulation

Drag oxygen, water, glucose and ions across a phospholipid bilayer to see what gets through, and why. Then add transport proteins and watch diffusion play out across a concentration gradient.

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Membrane explorer · Diffusion in motion · Mouse, touch and keyboard

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Diffusion & Osmosis Simulation

Predict first, then watch the molecules. Six guided stations follow diffusion, osmosis, the fluid mosaic, transport proteins, animal and plant cells in different solutions, and bulk transport.

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Six guided stations · Lab notebook · Mouse, touch and keyboard

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BIOL2420 Unit 2A Ch05: Review with Simulation

Where eukaryotic microbes fit, then protozoa, parasitic helminths and fungi. Work through clinical case files, sort the groups by their features, follow each life cycle, and finish with an exam check.

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Chapter 5 · Twelve guided stations · Case files · Exam check

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BIOL2420 Unit 2B Ch08: Review with Simulation

Build an enzyme, run the dam that makes ATP, and follow glucose through respiration and fermentation. Eleven guided stations cover Chapter 8 and end with an exam check.

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Chapter 8 · Eleven guided stations · Exam check · Completion card

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Oxidative Phosphorylation Simulation

Follow electrons through redox reactions, build a proton gradient, and make ATP. Seven guided stations connect oxidative phosphorylation with glycolysis and the citric acid cycle.

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Seven guided stations · Cellular respiration

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BIOL2420 Unit 2C Ch09: Review with Simulation

Grow a population and read the growth curve, count cells by dilution and plating, and see how oxygen, pH, temperature, salt and pressure decide where microbes live. Ends with clinical case files on the pathogens of Chapter 9.

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Chapter 9 · Ten guided stations · Clinical case files · Exam check

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Transcription

Find a gene, label its promoter, coding region and terminator, and pick the right RNA polymerase. Then run initiation, elongation and termination base by base, in a eukaryote or a bacterium, and read the RNA you made.

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Ten guided steps · Eukaryote and bacterium modes · Mouse, touch and keyboard

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Translation

Dock the ribosome on the mRNA, slide it to the start codon, and bring in the tRNA that matches each codon. Form peptide bonds, translocate, and let a release factor end the chain, all in a 3D model of the ribosome.

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Initiation, elongation and termination · 3D workbench · Mouse and keyboard

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Antibiotics Resistant Bacteria Simulation

Watch neutrophils and an antibiotic take on a mix of resistant and non-resistant bacteria. Compare the immune system alone, stopping the pills early, and finishing the full eight-day course, and see which bacteria are left.

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Three scenarios · Population graph · Adjustable speed

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Recombination Lab

Follow two linked genes through meiosis. Copy the DNA, exchange chromosome segments by crossing over, and track the alleles into four gametes to see how new combinations come from alleles that were already there.

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Six stages from G1 to gametes · Crossover and control runs · Mouse, touch and keyboard

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Innate Defense Simulation

Start at the first line of defense: eyelashes, tears, mucus and cilia, skin, sweat, sebum and the resident microbes. Then follow a needle stick from the breached barrier through cytokine alarms, mast cells, neutrophils leaving the vessel, phagocytosis and complement, to macrophage clean-up, and link each step to the cardinal signs.

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Chapter 17 · First line of defense · Inflammation step by step

ConceptNavi

Guided review, station by station · progress saves in this browser

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BIOL2420 Unit 3A Part 1 Ch10–11: DNA & DNA Replication

Zoom from a genome down to one gene, build nucleotides and a double helix, compare DNA with RNA, follow plasmids through a culture, run a replication fork, and find out why chromosomes need telomeres.

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Chapters 10–11 · Nine stations · Concept Check · Understanding Check

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BIOL2420 Unit 4A Ch17 Part 1: Barriers & Chemical Defenses

Follow innate and adaptive responses to a cut, sort defenses by line and kind, stop the cilia of an airway, watch antibiotics let C. difficile take over the gut, drop tears with lysozyme on Gram-positive and Gram-negative bacteria, see interferon protect a sheet of cells, and start the complement cascade.

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Chapter 17 · Part 1 · Five stations · Check Yourself

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BIOL2420 Unit 4A Ch17 Part 2: Cellular Defense, Blood & Lymphatics

Send lymph one way along the lymphatic highway, tell plasma from serum, follow hematopoiesis from the embryo to the adult and down the myeloid and lymphoid lines, meet the leukocytes, let a natural killer cell check the MHC class I badge, and read patients’ WBC differentials.

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Chapter 17 · Part 2 · Four stations · Check Yourself

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BIOL2420 Unit 4A Ch17 Part 3: Inflammation, Phagocytosis & Fever

Run the events of inflammation around a splinter and link each cardinal sign to its cause, follow infections to resolution, an abscess or a granuloma, guide a neutrophil through every step of phagocytosis, coat encapsulated bacteria with opsonins, and reset the hypothalamus to start and stop a fever.

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Chapter 17 · Part 3 · Four stations · Check Yourself